DeepDSL 
In recent years, Deep Learning (DL) has found great success in domains such as multimedia understanding. However, the complex nature of multimedia data makes it difficult to develop DL-based software. The state-of-the art tools, such as Caffe, TensorFlow, Torch7, and CNTK, while are successful in their applicable domains, are programming libraries with fixed user interface, internal representation, and execution environment. This makes it difficult to implement portable and customized DL applications. In this paper, we present DeepDSL, a domain specific language (DSL) embedded in Scala, that compiles deep networks written in DeepDSL to Java source code. Deep DSL provides (1) intuitive constructs to support compact encoding of deep networks; (2) symbolic gradient derivation of the networks; (3) static analysis for memory consumption and error detection; and (4) DSL-level optimization to improve memory and runtime efficiency. DeepDSL programs are compiled into compact, efficient, customizable, and portable Java source code, which operates the CUDA and CUDNN interfaces running on Nvidia GPU via a Java Native Interface (JNI) library. We evaluated DeepDSL with a number of popular DL networks. Our experiments show that the compiled programs have very competitive runtime performance and memory efficiency compared to the existing libraries. …
LadderNet
U-Net has been providing state-of-the-art performance in many medical image segmentation problems. Many modifications have been proposed for U-Net, such as attention U-Net, recurrent residual convolutional U-Net (R2-UNet), and U-Net with residual blocks or blocks with dense connections. However, all these modifications have an encoder-decoder structure with skip connections, and the number of paths for information flow is limited. We propose LadderNet in this paper, which can be viewed as a chain of multiple U-Nets. Instead of only one pair of encoder branch and decoder branch in U-Net, a LadderNet has multiple pairs of encoder-decoder branches, and has skip connections between every pair of adjacent decoder and decoder branches in each level. Inspired by the success of ResNet and R2-UNet, we use modified residual blocks where two convolutional layers in one block share the same weights. A LadderNet has more paths for information flow because of skip connections and residual blocks, and can be viewed as an ensemble of Fully Convolutional Networks (FCN). The equivalence to an ensemble of FCNs improves segmentation accuracy, while the shared weights within each residual block reduce parameter number. Semantic segmentation is essential for retinal disease detection. We tested LadderNet on two benchmark datasets for blood vessel segmentation in retinal images, and achieved superior performance over methods in the literature. …
Correlated Topic Model (CTM)
Topic models, such as latent Dirichlet allocation (LDA), can be useful tools for the statistical analysis of document collections and other discrete data. The LDA model assumes that the words of each document arise from a mixture of topics, each of which is a distribution over the vocabulary. A limitation of LDA is the inability to model topic correlation even though, for example, a document about genetics is more likely to also be about disease than x-ray astronomy. This limitation stems from the use of the Dirichlet distribution to model the variability among the topic proportions. In this paper we develop the correlated topic model (CTM), where the topic proportions exhibit correlation via the logistic normal distribution. We derive a mean-field variational inference algorithm for approximate posterior inference in this model, which is complicated by the fact that the logistic normal is not conjugate to the multinomial. The CTM gives a better fit than LDA on a collection of OCRed articles from the journal Science. Furthermore, the CTM provides a natural way of visualizing and exploring this and other unstructured data sets. …
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